The high efficiency of Photosystem I in the green alga Chlamydomonas reinhardtii is maintained after the antenna size is substantially increased by the association of Light Harvesting Complex II [Bioenergetics]

October 26th, 2015 by

Photosystems (PS) I and II activities depend on their light-harvesting capacity and trapping efficiency, which vary in different environmental conditions. For optimal functioning, these activities need to be balanced. This is achieved by redistribution of excitation energy between the two photosystems via the association and disassociation of Light Harvesting Complexes (LHC)II, in a process known as state transitions. Here we study the effect of LHCII binding to PSI on its absorption properties and trapping efficiency by comparing time-resolved fluorescence kinetics of PSI-LHCI and PSI-LHCI-LHCII complexes of C. reinhardtii. PSI-LHCI-LHCII of C. reinhardtii is the largest PSI supercomplex isolated so far and contains 7 Lhcbs, in addition to the PSI core and the 9 Lhcas that compose PSI-LHCI, together binding ~320 chlorophylls. The average decay time for PSI-LHCI-LHCII is ~65 ps upon 400 nm excitation (15 ps slower than PSI-LHCI) and ~78 ps upon 475 nm excitation (27 ps slower). The transfer of excitation energy from LHCII to PSI-LHCI occurs in ~60 ps. This relatively slow transfer compared to that from LHCI to the PSI core, suggests loose connectivity between LHCII and PSI-LHCI. Despite the relatively slow transfer, the overall decay time of PSI-LHCI-LHCII remains fast enough to assure a 96% trapping efficiency, which is only 1.4% lower than that of PSI-LHCI, concomitant with an increase of the absorption cross section of 47%. This indicates that, at variance with PSII, the design of PSI allows for a large increase of its light-harvesting capacities.
  • Posted in Journal of Biological Chemistry, Publications
  • Comments Off on The high efficiency of Photosystem I in the green alga Chlamydomonas reinhardtii is maintained after the antenna size is substantially increased by the association of Light Harvesting Complex II [Bioenergetics]

Dual Action of Zn2+ on the Transport Cycle of the Dopamine Transporter [Enzymology]

October 26th, 2015 by

The dopamine transporter shapes dopaminergic neurotransmission by clearing extracellular dopamine and by replenishing vesicular stores. The dopamine transporter carries an endogenous binding site for Zn2+, but the nature of the Zn2+-dependent modulation has remained elusive: both, inhibition and stimulation of DAT have been reported. Here, we exploited the high time resolution of patch-clamp recordings to examine the effects of Zn2+ on the transport cycle of DAT: we recorded peak currents associated with substrate translocation and steady-state currents reflecting the forward transport mode of DAT. Zn2+ depressed the peak current but enhanced the steady-state current through DAT. The parsimonious explanation is preferential binding of Zn2+ to the outward facing conformation of DAT, which allows for an allosteric activation of DAT in both, the forward transport mode and substrate exchange mode. We directly confirmed that Zn2+ dissociated more rapidly from the inward- than from the outward-facing state of DAT. Finally, we formulated a kinetic model for the action of Zn2+ on DAT that emulated all current experimental observations and accounted for all previous - in part contradictory - findings. Importantly, the model predicts that the intracellular Na+ concentration determines whether substrate uptake by DAT is stimulated or inhibited by Zn2+. This prediction was directly verified. The mechanistic framework provided by the current model is of relevance for the rational design of allosteric activators of DAT. These are of interest for treating de novo loss-of-function mutations of DAT associated with neuropsychiatric disorders such as attention deficit hyperactivity disorder (ADHD).

SAS-4 in Trypanosoma brucei controls life cycle transitions by modulating the length of the flagellum attachment zone filament [Cell Biology]

October 26th, 2015 by Hu, H., Zhou, Q., Li, Z.

The evolutionarily conserved centriole/basal body protein SAS-4 regulates centriole duplication in metazoa and basal body duplication in flagellated and ciliated organisms. Here, we report that the SAS-4 homolog in the flagellated protozoan Trypanosoma brucei, TbSAS-4, plays an unusual role in controlling life cycle transitions by regulating the length of the flagellum attachment zone (FAZ) filament, a specialized cytoskeletal structure required for flagellum adhesion and cell morphogenesis. TbSAS-4 is concentrated at the distal tip of the FAZ filament, and depletion of TbSAS-4 in the trypomastigote form disrupts the elongation of the new FAZ filament, generating cells with a shorter FAZ associated with a longer unattached flagellum and re-positioned kinetoplast and basal body, reminiscent of epimastigote-like morphology. Further, we show that TbSAS-4 associates with several FAZ tip proteins, and depletion of TbSAS-4 disrupts the enrichment of several of these FAZ tip proteins at the new FAZ tip, suggesting a role of TbSAS-4 in maintaining the integrity of this FAZ tip protein complex. Together, these results uncover a novel function of TbSAS-4 in regulating the length of the FAZ filament to control basal body positioning and life cycle transitions in T. brucei.
  • Posted in Journal of Biological Chemistry, Publications
  • Comments Off on SAS-4 in Trypanosoma brucei controls life cycle transitions by modulating the length of the flagellum attachment zone filament [Cell Biology]

Mutant B-Raf (V600E) promotes melanoma paracellular transmigration by inducing thrombin-mediated endothelial junction breakdown [Cell Biology]

October 26th, 2015 by

Tumor invasiveness depends on the ability of tumor cells to breach endothelial barriers. In the current study, we investigated the mechanism by which the adhesion of melanoma cells to endothelium regulates adherens junction (AJ) integrity and modulates tumor transendothelial migration (TEM) by initiating thrombin generation. We found that the V600EB-Raf mutation in metastatic melanoma cells upregulated tissue factor (TF) expression on cell membranes and promoted thrombin production. Co-culture of endothelial monolayers with metastatic melanoma cells mediated the opening of inter-endothelial spaces near melanoma cell contact sites in the presence of platelet-free plasma (PFP). By using small interfering RNA (siRNA), we demonstrated that V600EB-Raf and TF silencing attenuated the focal disassembly of AJ induced by tumor contact. Vascular endothelial-cadherin (VE-cadherin) disassembly was dependent on phosphorylation of p120-catenin on serine, S879, and VE-cadherin on tyrosine, Y658, Y685 and Y731, which can be prevented by treatment with the thrombin inhibitor, hirudin, or by silencing the thrombin receptor, protease-activated receptor-1(PAR-1), in endothelial cells. We also provided strong evidence that tumor-derived thrombin enhanced melanoma TEM by inducing ubiquitination-coupled VE-cadherin internalization, focal adhesion formation, and actin assembly in endothelium. Confocal microscopic analysis of tumor TEM revealed that junctions transiently opened and resealed as tumor cells accomplished TEM. In addition, in the presence of PFP, tumor cells preferentially transmigrated via paracellular routes. PFP supported melanoma transmigration under shear conditions via a V600EB-Raf-thrombin-dependent mechanism. We concluded that the activation of thrombin generation by cancer cells in plasma is an important process regulating melanoma extravasation by disrupting endothelial junction integrity.
  • Posted in Journal of Biological Chemistry, Publications
  • Comments Off on Mutant B-Raf (V600E) promotes melanoma paracellular transmigration by inducing thrombin-mediated endothelial junction breakdown [Cell Biology]

Mechanisms of Enhancer-mediated Hormonal Control of Vitamin D Receptor Gene Expression in Target Cells [Gene Regulation]

October 25th, 2015 by Lee, S. M., Meyer, M. B., Benkusky, N. A., O'Brien, C. A., Pike, J. W.

The biological actions of 1,25-dihydroxyvitamin D3 (1,25(OH)2D3) are mediated by the vitamin D receptor (VDR) whose expression in bone cells is regulated positively by 1,25(OH)2D3, retinoic acid and parathyroid hormone through both intergenic and intronic enhancers. In this report, we used ChIP-seq analysis to confirm the presence of these Vdr gene enhancers in mesenchymal-derived bone cells and then describe the epigenetic histone landscape that span the Vdr locus. Using bacterial artificial chromosome-minigene stable cell lines, CRISPR/Cas9 enhancer-deleted daughter cell lines, transient transfection/mutagenesis analyses and transgenic mice, we confirm the functionality of these bone cell enhancers in vivo as well as in vitro. We also identified VDR binding sites across the Vdr gene locus in kidney and intestine using ChIP-seq analysis, revealing that that only one of the bone cell-type enhancers bound VDR in kidney tissue and none were occupied by the VDR in the intestine, consistent with weak or absent regulation by the 1,25(OH)2D3 hormone in these tissues, respectively. However, a number of additional sites of VDR binding unique to either kidney or intestine were present further upstream of the Vdr gene, suggesting the potential for alternative regulatory loci. Importantly, virtually all of these regions retained histone signatures consistent with those of enhancers and exhibited unique DNase I hypersensitivity profiles that reflected the potential for chromatin access. These studies define mechanisms associated with hormonal regulation of the Vdr and hint at the differential nature of VDR binding activity at the Vdr gene in different primary target tissues in vivo.

ROS mediates p300-dependent STAT1 interaction with PPAR{gamma} in CD36 expression and foam cell formation [Lipids]

October 25th, 2015 by Kotla, S., Rao, G. N.

Previously we have demonstrated that 15(S)-HETE induces CD36 expression involving STAT1. Many studies have shown that PPARγ mediates CD36 expression. Therefore, we asked the question whether these transcriptional factors interact with each other in the regulation of CD36 expression by 15(S)-HETE. Here we show that STAT1 interacts with PPARγ in the induction of CD36 expression and foam cell formation by 15(S)-HETE. In addition, using molecular biological approaches such as EMSA, supershift EMSA, ChIP, re-ChIP and promoter-reporter gene assays, we demonstrate that the STAT1 and PPARγ complex binds to STAT binding site at -107 nt in the CD36 promoter and enhances its activity. Furthermore, the interaction of STAT1 with PPARγ depends on STAT1 acetylation, which is mediated by p300. In addition, our findings show that ROS-dependent Syk and Pyk2 stimulation is required for p300 tyrosine phosphorylation and activation. Together, these results demonstrate that an interaction between p300, STAT1 and PPARγ is required for 15(S)-HETE-induced CD36 expression, oxLDL uptake and foam cell formation, critical events underlying the pathogenesis of atherosclerosis.

Pleiotropic Functions of Tumor Suppressor WWOX in Normal and Cancer Cells [Molecular Bases of Disease]

October 23rd, 2015 by

WW domain-containing oxidoreductase (WWOX), originally marked as a likely tumor suppressor gene, has over the years become recognized for its role in a much wider range of cellular activities. Phenotypic effects displayed in animal studies, along with resolution of WWOX's architecture, fold, and binding partners, point to the protein's multifaceted biological functions. Results from a series of complementary experiments seem to indicate WWOX's involvement in metabolic regulation. More recently, clinical studies involving cases of severe encephalopathy suggest WWOX also plays a part in controlling CNS development, further expanding our understanding of the breadth and complexity of WWOX behavior. Here we present a short overview of the various approaches taken to study this dynamic gene, emphasizing the most recent findings regarding WWOX's metabolic- and CNS-associated functions and their underlying molecular basis.

Probing the Mec1/ATR Checkpoint Activation Mechanism with Small Peptides [Signal Transduction]

October 23rd, 2015 by

Yeast Mec1, the ortholog of human ATR, is the apical protein kinase that initiates the cell cycle checkpoint in response to DNA damage and replication stress. The basal activity of Mec1 kinase is activated by cell cycle phase-specific activators. Three distinct activators stimulate Mec1 kinase using an intrinsically disordered domain of the protein. These are the Ddc1 subunit of the 9-1-1 checkpoint clamp (ortholog of human and S. pombe Rad9), the replication initiator Dpb11 (ortholog of human TopBP1 and S. pombe Cut5), and the multifunctional nuclease/helicase Dna2. Here, we use small peptides to determine the requirements for Mec1 activation. For Ddc1, we identify two essential aromatic amino acids in a hydrophobic environment that when fused together are proficient activators. Using this increased insight, we have been able to identify homologous motifs in S. pombe Rad9 that can activate Mec1. Furthermore, we show that a 9-amino acid Dna2-based peptide is sufficient for Mec1 activation. Studies with mutant activators suggest that binding of an activator to Mec1 is a two-step process, the first step involving the obligatory binding of essential aromatic amino acids to Mec1, followed by an enhancement in binding energy through interactions with neighboring sequences.

The Stable Interaction Between Signal-Peptidase LepB of Escherichia coli and Nuclease Bacteriocins Promotes Toxin Entry into the Cytoplasm [Microbiology]

October 23rd, 2015 by Mora, L., Moncoq, K., England, P., Oberto, J., de Zamaroczy, M.

LepB is a key membrane component of the cellular secretion machinery, which releases secreted proteins into the periplasm by cleaving the inner membrane-bound leader. We showed that LepB is also an essential component of the machinery hijacked by the tRNase colicin D for its import. Here we demonstrate that this non-catalytic activity of LepB is to promote the association of the central domain of colicin D with the inner membrane, prior to the FtsH-dependent proteolytic processing and translocation of the toxic tRNase domain into the cytoplasm. The novel structural role of LepB results in a stable interaction with colicin D, with a stoichiometry of 1:1 and a nanomolar Kd determined in vitro. LepB provides a chaperone-like function for the penetration of several nuclease-type bacteriocins into target cells. The colicin-LepB interaction is shown to require only a short peptide sequence within the central domain of these bacteriocins and to involve residues present in the short C-terminal Box E of LepB. Genomic screening identified the conserved LepB binding motif in colicin-like ORFs from thirteen additional bacterial species. These findings establish a new paradigm for the functional adaptability of an essential inner-membrane enzyme.
  • Posted in Journal of Biological Chemistry, Publications
  • Comments Off on The Stable Interaction Between Signal-Peptidase LepB of Escherichia coli and Nuclease Bacteriocins Promotes Toxin Entry into the Cytoplasm [Microbiology]

Functional characterization of monomeric GTPase Rab1 in the secretory pathway of Leishmania [Microbiology]

October 23rd, 2015 by Bahl, S., Parashar, S., Malhotra, H., Raje, M., Mukhopadhyay, A.

Leishmania secretes large number of their effectors to the extracellular milieu. However, regulation of secretory pathway in Leishmania is not well characterized. Here, we report the cloning, expression and characterization of Rab1 homologue from Leishmania. We have found that Ld-Rab1 localizes in Golgi in Leishmania. To understand the role of Ld-Rab1 in the secretory pathway of Leishmania, we have generated transgenic parasites overexpressing Ld-GFP-Rab1:WT, Ld-GFP-Rab1:Q67L, a GTPase deficient dominant-positive mutant of Rab1 and Ld-GFP-Rab1:S22N, a GDP locked dominant-negative mutant of Rab1. Surprisingly, our results have shown that overexpression of Ld-GFP-Rab1:Q67L or Ld-GFP-Rab1:S22N does not disrupt the trafficking and localization of HbR in Leishmania. To determine whether Rab1 dependent secretory pathway is conserved in parasites, we have analyzed the role of Ld-Rab1 in the secretion of secretory acid phosphatase (SAP) and Ld-gp63 in Leishmania. Our results have shown that overexpression of Ld-GFP-Rab1:Q67L or Ld-GFP-Rab1:S22N significantly inhibits the secretion of SAP by Leishmania. We have also found that overexpression of Ld-GFP-Rab1:Q67L or Ld-GFP-Rab1:S22N retains Ld-RFP-gp63 in Golgi and blocks the secretion of Ld-gp63 whereas the trafficking of Ld-RFP-gp63 in Ld-GFP-Rab1:WT expressed cells is unaltered in comparison to control cells. Taken together, our results have shown that Rab1 regulated secretory pathway is well conserved and HbR trafficking follows Rab1 independent secretory pathway in Leishmania.